Figure 1. Web-based point-and-click interface for data analysis in Partek Flow.

Figure 2. Examples of analysis visualization in Partek Flow.

Partek Flow with Partek Pathway

(Single Cell Analysis)

Partek Flow is web-based analysis tool (installed on CPOS servers), and is available 24 hours a day, 7 days a week.

Input data type (For 10X single cell Gene expression data generated from CPOS):

• Next Generation Sequencing (NGS) raw data such as:
  • FASTQ
• NGS quantified data such as:
  • Cell count matrix from 10X Cell Ranger
• NGS processed data such as (if applicable):
  • RDS from R/Seurat

Key Features:

• Import and process data with a variety of standard formats and export at any step
• Classify cells into known and novel cell types
• Discover biomarkers that define a cell population
• Find differentially expressed genes and proteins
• Identify differentially expressed pathways
• Compare cell type populations between experimental groups
• Integrate gene and protein expression data from multi-omics experiments

You may also visit Partek Flow website or view the online documentation and tutorial for more details.

Service Charges:

Service charges of Partek Flow consist of a software usage fee and data storage fee. Please contact us for details.

Software usage fee:

• • charge on daily basis
  • waived for CPOS 10X users (subject to terms and conditions)

Data storage fee:

• • charge in unit of 1000 GB on monthly basis
  • refer to charging policy of HPCF accounts

Service Ordering:

Please refer to CPOS Partek Flow Booking Guide to reserve the service through iLab. If you are using Partek Flow for the first time, please contact us to setup an account.