Analysis Software

Imaging and Flow Cytometry Core

Imaris

Imaris

Version: 10.0

Available module:

Imaris Core – Render 3D/4D images, detect objects, snapshot & animation
Imaris MeasurementPro –Report and interact with detected object measurements
Imaris Coloc – Visualize and quantify colocalized regions
Imaris Vantage – Plot in 1D-4D, compare groups with statistical tests
Imaris TrackLineage – Track motion in 2D/3D, detect divisions, create lineage tree
Imaris Filament Tracer – Trace filamentous structures, neurons, vessels, detect spines
Imaris Cell – Segment and analyze cells and their compartments
Imaris XT – Customize analysis with Matlab, Python, Java, R
Imaris Batch – Utilise saved protocols for batch analysis
ClearView™ – GPU-accelerated deconvolution
Imaris Stitcher –Precise alignment and stitching of multiple image tiles

More information at: https://imaris.oxinst.com/

MetaMorph Offline

Version: 7.7.0.0 & 7.8.0.0

Available module:

MetaMorph Premier – review multi-dimensional data, region measurements, cell tracking and colocalization measurement

Angiogenesis tube formation – analysis of blood vessel formation for angiogenesis in cancer, diabetes and other vascular disease research

Cell cycle – classification and quantification of cells in G0/G1, S, G2, Early or Late M stages of the cell cycle

Cell Health – classification of cells in viable, early apoptosis, late apoptosis or necrosis

Cell Scoring /Multi Wavelength Cell Scoring – Identification and quantification of subpopulations of cells tagged with fluorescent probes

Count Nuclei – automatic counting of nuclei for most types of cells

Granularity – analysis of punctate structures in cells

Live/dead – analysis of cell proliferation or death

Mitotic Index – quantitative discrimination of mitotic and interphase cells

Neurite Outgrowth – measurement and characterization of neurite length and branching

More information at: http://www.moleculardevices.com/products/software/meta-imaging-series/metamorph.html

ZEN 3.1 for LSM900/LSM980

ZEN 2.6 for LSM780/800/880

ZEN3.3 for LSM900

JPKNT for Optical Tweezers/TIRF System

FlowJo

Volocity

AMIRA 3D

Nikon NIS-Elements

Version: Nikon NIS-Elements

Available modules:

Image export (individual/batch)
Movie export
Clarify.ai
Denoise.ai
Restore.ai
Deconvolution
Batch deconvolution
Segmentation layers
Spot counting
Fluorescence intensity measurements (time measurements)

More information at: NIS-Elements | Software | Nikon Microscope Products | Nikon Instruments Inc.

Free version NIS-Elements Viewer could be downloaded at: NIS-Elements Viewer

Online Booking

Analysis Software

LKS Faculty of Medicine, HKU

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